Converts a label image to coordinates summarizing their positions

labelImageCentroids(img, physical = FALSE, convex = TRUE)

Arguments

img

ants image of labels (ints)

physical

boolean if you want physical space coordinates or not

convex

- if TRUE, return centroid, if FALSE return point with min average distance to other points with same label

Value

list with labels , array of label values, and centroids <- coordinates of label centroids

Examples

labelImage<-makeImage( c(2,2,2) , 0:7 ) labelImageCentroids(labelImage)
#> | | | 0% | |======================================================================| 100%
#> $labels #> [1] 1 2 3 4 5 6 7 #> #> $vertices #> xc yc zc #> [1,] 2 1 1 #> [2,] 1 2 1 #> [3,] 2 2 1 #> [4,] 1 1 2 #> [5,] 2 1 2 #> [6,] 1 2 2 #> [7,] 2 2 2 #>