Update Residuals for SiMLR — antspymm_simlr_update

This function updates residuals for SiMLR by applying different covariate transformations.

antspymm_simlr_update_residuals(
  mats,
  x,
  covariate,
  blaster2,
  allnna,
  n.comp,
  opt = NULL
)

Arguments

mats: A list of matrices.
x: An index to select a matrix from the list.
covariate: A character string specifying the covariate transformation to apply.
blaster2: A data frame containing additional covariate data.
allnna: A logical vector indicating non-missing data points.
n.comp: An integer specifying the number of components.
opt: A character string. If set to "opt", the function will print available covariate options.

Value

The residual matrix after applying the specified covariate transformation. If `opt` is set to "opt", the function will print available covariate options and return NULL.

Examples

if (FALSE) { # \dontrun{
antspymm_simlr_update_residuals(mats, 1, "whiten", blaster2, allnna, 5)
antspymm_simlr_update_residuals(opt = "opt")
} # }