1try:
2 from .version import __version__
3except:
4 pass
5
6from .mm import get_data
7from .mm import ants_to_nibabel_affine
8from .mm import get_dti
9from .mm import efficient_tensor_fit
10from .mm import efficient_dwi_fit
11from .mm import triangular_to_tensor
12from .mm import dti_numpy_to_image
13from .mm import transform_and_reorient_dti
14from .mm import get_models
15from .mm import nrg_format_path
16from .mm import highest_quality_repeat
17from .mm import average_blind_qc_by_modality
18from .mm import match_modalities
19from .mm import outlierness_by_modality
20from .mm import dewarp_imageset
21from .mm import super_res_mcimage
22from .mm import dipy_dti_recon
23from .mm import segment_timeseries_by_meanvalue
24from .mm import wmh
25from .mm import neuromelanin
26from .mm import joint_dti_recon
27from .mm import resting_state_fmri_networks
28from .mm import t1_based_dwi_brain_extraction
29from .mm import dwi_deterministic_tracking
30from .mm import dwi_closest_peak_tracking
31from .mm import dwi_streamline_connectivity
32from .mm import hierarchical_modality_summary
33from .mm import dwi_streamline_pairwise_connectivity
34from .mm import write_bvals_bvecs
35from .mm import mm
36from .mm import mm_nrg
37from .mm import mm_csv
38from .mm import write_mm
39from .mm import mask_snr
40from .mm import crop_mcimage
41from .mm import alff_image
42from .mm import alffmap
43from .mm import spec_taper
44from .mm import spec_ci
45from .mm import spec_pgram
46from .mm import plot_spec
47from .mm import down2iso
48from .mm import tra_initializer
49from .mm import mm_read
50from .mm import mm_read_to_3d
51from .mm import image_write_with_thumbnail
52from .mm import nrg_filelist_to_dataframe
53from .mm import bind_wide_mm_csvs
54from .mm import augment_image
55from .mm import boot_wmh
56from .mm import threaded_bind_wide_mm_csvs
57from .mm import average_mm_df
58from .mm import get_names_from_data_frame
59from .mm import read_mm_csv
60from .mm import assemble_modality_specific_dataframes
61from .mm import aggregate_antspymm_results
62from .mm import aggregate_antspymm_results_sdf
63from .mm import mc_denoise
64from .mm import mc_reg
65from .mm import dti_reg
66from .mm import timeseries_reg
67from .mm import timeseries_transform
68from .mm import copy_spatial_metadata_from_3d_to_4d
69from .mm import concat_dewarp
70from .mm import mc_resample_image_to_target
71from .mm import trim_dti_mask
72from .mm import impute_fa
73from .mm import get_average_dwi_b0
74from .mm import dti_template
75from .mm import merge_dwi_data
76from .mm import merge_timeseries_data
77from .mm import bvec_reorientation
78from .mm import tsnr
79from .mm import dvars
80from .mm import slice_snr
81from .mm import quick_viz_mm_nrg
82from .mm import blind_image_assessment
83from .mm import get_average_rsf
84from .mm import version
85from .mm import best_mmm
86from .mm import nrg_2_bids
87from .mm import bids_2_nrg
88from .mm import validate_nrg_file_format
89from .mm import parse_nrg_filename
90from .mm import novelty_detection_ee
91from .mm import novelty_detection_svm
92from .mm import novelty_detection_lof
93from .mm import novelty_detection_loop
94from .mm import novelty_detection_quantile
95from .mm import generate_mm_dataframe
96from .mm import generate_mm_dataframe_gpt
97from .mm import collect_blind_qc_by_modality
98from .mm import get_valid_modalities
99from .mm import study_dataframe_from_matched_dataframe
100from .mm import merge_wides_to_study_dataframe
101from .mm import map_scalar_to_labels
102from .mm import template_figure_with_overlay
103from .mm import brainmap_figure
104from .mm import bold_perfusion
105from .mm import bold_perfusion_minimal
106from .mm import filter_image_files
107from .mm import docsamson
108from .mm import enantiomorphic_filling_without_mask
109from .mm import loop_timeseries_censoring
110from .mm import score_fmri_censoring
111from .mm import replace_elements_in_numpy_array
112from .mm import remove_elements_from_numpy_array
113from .mm import remove_volumes_from_timeseries
114from .mm import impute_timeseries
115from .mm import impute_dwi
116from .mm import censor_dwi
117from .mm import timeseries_n3
118from .mm import calculate_CBF
119from .mm import estimate_optimal_pca_components
120from .mm import filter_df
121from .mm import remove_elements_from_list
122from .mm import despike_time_series
123from .mm import despike_time_series_afni
124from .mm import convert_np_in_dict
125from .mm import read_ants_transforms_to_numpy
126from .mm import clean_tmp_directory
127from .mm import dict_to_dataframe
128from .mm import PerAF
129from .mm import get_antsimage_keys
130from .mm import filter_columns_by_nan_percentage
131from .mm import nrg_filename_to_subjectvisit
132from .mm import add_repeat_column
133from .mm import mm_match_by_qc_scoring
134from .mm import mm_match_by_qc_scoring_all
135from .mm import fix_LR_RL_stuff
136from .mm import segment_timeseries_by_bvalue
137from .mm import shorten_pymm_names
138from .mm import pet3d_summary
139from .mm import deformation_gradient_optimized
140from .mm import efficient_dwi_fit_voxelwise
141from .mm import generate_voxelwise_bvecs
142from .mm import distortion_correct_bvecs
143from .mm import apply_transforms_mixed_interpolation